Fix problems with shutdown, REPL, etc.

.env

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+PYTHONPATH=./src:./third_party/modules

.gitmodules

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+[submodule "third_party/packages/apscheduler"]
+	path = third_party/packages/apscheduler
+	url = https://github.com/agronholm/apscheduler.git
+[submodule "third_party/packages/ptpython"]
+	path = third_party/packages/ptpython
+	url = https://github.com/prompt-toolkit/ptpython.git
+[submodule "third_party/packages/six"]
+	path = third_party/packages/six
+	url = https://github.com/benjaminp/six.git

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